{"id":822,"date":"2017-04-17T16:40:22","date_gmt":"2017-04-17T09:40:22","guid":{"rendered":"http:\/\/en.prc.maiatech.com.vn\/?p=822"},"modified":"2017-04-17T16:40:22","modified_gmt":"2017-04-17T09:40:22","slug":"variation-of-seed-storage-prolamin-from-north-vietnam-local-rice-cultivars","status":"publish","type":"post","link":"https:\/\/en.prc.org.vn\/?p=822","title":{"rendered":"Variation of seed storage prolamin from North Vietnam local rice cultivars"},"content":{"rendered":"

HOAI T. T., T. KUMAMARU and H. SATOH<\/strong><\/p>\n

Laboratory of Plant Genetic Resources, Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, 812-8581 Japan<\/p>\n

Rice prolamin, an alcohol-soluble protein, constitutes 5 to 10% of total rice storage protein.\u00a0 We previously characterized seed storage prolamin in some local rice cultivars to provide the information for improving the nutritional quality of rice grain (Satoh et al. 1990, Aung et al. 2002).\u00a0 The study reported here was conducted to characterize the variation of prolamin profiles in Northern Vietnam local rice cultivars.<\/p>\n

One hundred and eighty five cultivars collected from mountainous areas of Northern Vietnam were used in this study.\u00a0 A japonica rice cultivar Kinmaze and an indica rice cultivar IR36 were used as control varieties.\u00a0 Prolamins were extracted from rice flour derived from mature seeds using an\u00a0 extraction buffer containing 60% n-propanol and 5% 2-mercaptoethanol. SDS-PAGE with the discontinuous buffer system of Laemmli (1970) and isoelectric focusing (IEF) analyses were conducted to characterize the prolamin profile.\u00a0 By SDS-PAGE analysis, the prolamins extracted from Kinmaze and IR36 were separated into 16, 15, 13 and 10kDa polypeptides.\u00a0 SDS-PAGE patterns in prolamins from Vietnam rice germplasm ware shown in Fig. 1.\u00a0 Prolamins from local rice cultivars were separated into six bands ranging from 16kDa to 10kDa.\u00a0 In addition to 4 bands found in two control varieties, two specific bands, namely 14kDa and 12.5kDa, were observed. The number of SDS-PAGE bands per cultivars varied from three to four.<\/p>\n

<\/p>\n

A large number of cultivars possessed three to four bands whereas a minimum number of cultivars were found with two to three bands.\u00a0 Prolamins from Vietnam rice cultivars varied not only in the presence or absence of bands but also in the staining intensity.\u00a0 The Vietnam rice cultivars were grouped into seven types based on the combination of bands differing in molecular mass.\u00a0 The 12.5kDa was presented in types 5 and 7, while the 14kDa was present in type 4.\u00a0 The variation in the staining intensity of 13 and 15 kDa bands were showed in types 1, 3 and 6.\u00a0 The 13kDa was absent in type 2.\u00a0 These results suggested that by SDS-PAGE analysis, Northern Vietnam local rice cultivars have a high diversity in prolamine profiles.<\/p>\n

<\/p>\n

IEF analysis is known as an useful method for detecting variation of prolamine polypeptides based on their electric charges.\u00a0 Fig. 2 shows the variation in prolamine polypeptides among Vietnam rice cultivars by IEF analysis.\u00a0 Kinmaze and IR36 possessed seven bands.\u00a0 Nineteen IEF bands were detected totally among 185 cultivars.\u00a0 Among them, seven additional IEF bands were observed, bands 1, 4, 6, 8, 9, 14 and 18.\u00a0 The number of the IEF bands varying among cultivars ranged from 5 to 12.\u00a0 Thus, significant differences in staining intensity, pI and a number of bands were observed on prolamins from Northern Vietnam rice cultivars.\u00a0 It is interesting to note that ten IEF bands showed the greatest variation in IEF band patterns, which were characterized as four levels of staining intensity; absent,\u00a0 present, low and high.\u00a0 The Kinmaze and IR36 IEF band-type cultivars were found only in a few Vietnum rice samples.\u00a0 In addition to IR36 and Kinmaze patterns, a wide varity of other petterns was observed in other cultivars.\u00a0 Recently, a lot of intensively studies have focused on the aspect of genetic and synthesis of seed storage prolamin.\u00a0 However, in local rice cultivars, little is known about the relationship between IEF polypeptide patterns and genes encoded them as well as their expression by SDS-PAGE.\u00a0 In this study, we found that each SDS-PAGE types showed the wide variation in pI, the band staining intensity and a number of bands.\u00a0 However, SDS-PAGE band patterns and IEF band patterns were not well correlated.\u00a0 This result is consistent with a previous study (Aung et al. 2002).<\/p>\n

References<\/h1>\n

Aung P. P., T. Kumamaru and H. Satoh, 2002. Genetic diversity of prolamin polypeptides in Myanmar local rice cultivars\u00a0 RGN 19\uff1a66-67<\/p>\n

Kim W. and T. W. Okita, 1988. Structure, expression, and heterogeneity of the rice seed prolamine. Plant Physiol. 88\uff1a649-655<\/p>\n

Laemmli U. K, 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227\uff1a680-685<\/p>\n

Satoh H., R. X. Roland and T. C. Katayama, 1990. SDS-PAGE analysis of storage proteins of cultivated rice collected in Madagascar, 1988. Kagoshima Uni. Res. Center S. Paci.,Occ. Papers. 8\uff1a101-113.<\/p>\n","protected":false},"excerpt":{"rendered":"

HOAI T. T., T. KUMAMARU and H. SATOH Laboratory of Plant Genetic Resources, Institute of Genetic Resources, Faculty of Agriculture,<\/p>\n","protected":false},"author":3,"featured_media":823,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[39],"tags":[],"_links":{"self":[{"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/posts\/822"}],"collection":[{"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=822"}],"version-history":[{"count":1,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/posts\/822\/revisions"}],"predecessor-version":[{"id":824,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/posts\/822\/revisions\/824"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=\/wp\/v2\/media\/823"}],"wp:attachment":[{"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=822"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=822"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/en.prc.org.vn\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=822"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}